trcls

trcls (Transcript Classifier) annotates a SAM alignment file with potential splice variants using known features from a GTF annotation file.

Contents

• Installation
• Quickstart
  • SAM Alignment File
  • Obtaining a GTF Annotation File
  • Output
  • Annotations
• Options
  • Positional Arguments
  • Named Arguments
• Support
• Poster

Showcase

IGV visualisation of identified and annotated FLNA mature mRNA reads.

IGV visualisation of identified and annotated FLNA mature pre-mRNA reads.